Version 10 (modified by sunk, 9 years ago) (diff)

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It is currently under development as we migrate the manual to a wiki format.

Table of Contents

    1. 1.1 About Ecopath with Ecosim
  1. Abstract
  2. 14 ACKNOWLEDGEMENTS
    1. 4.3 Advection in Ecospace
    1. 3.1 An overview of Ecosim
    1. 4.1 An overview of Ecospace
    1. 8.10 Apply forcing function (consumer)
    1. 8.11 Apply forcing function (primary producer)
    1. 8.8 Apply mediation
    1. 7.22 Ascendancy
    1. 10.5 Assign habitats
    1. 7.2 Balancing a model
    1. 10.4 Basemap
    1. 7.3 Basic estimates
    1. 6.6 Basic input
  3. 12 Capabilities and limitations
    1. 3.14 Compensatory growth
    1. 3.12 Compensatory mechanisms
    1. 3.15 Compensatory natural mortality
    1. 2.7 Consumption
    1. 7.8 Consumption (Ecopath parameterization)
    1. (To be inserted in TOC) Contaminant Tracing
    1. 7.24 Cycles and pathways
    1. 3.4 Dealing with dynamic instability in Ecosim / Ecospace
    1. 2.5 Dealing with open system problems
    1. 10.3 Define Ecospace habitats
    1. 2.4 Defining the system
    1. 3.19 Density-dependent changes in catchability
    1. 6.8 Detritus fate
    1. 6.7 Diet composition
    1. 6.14 Discard fate
    1. 6.13 Discards
    1. 10.6 Dispersal
  4. 6 Using Ecopath. Part 1: Ecopath inputs
    1. 6.1 Getting started in Ecopath: The Ecopath menu
  5. 7 Using Ecopath. Part 2: Parameterization and outputs
    1. 7.14 Ecopath tools
  6. 5 Ecopath with Ecosim 6: Getting started
    1. 3.2 Ecosim Basics
    1. 9.1 An Ecosim exercise
  7. 8 Using Ecosim. Part 1: Ecosim inputs
  8. 9 Using Ecosim. Part 2: Ecosim outputs
    1. 8.2 Ecosim parameters
    1. 9.3 Ecosim plot
    1. 9.4 Ecosim results
    1. 9.6 Ecosim tools
    1. 10.7 Advection
    1. 10.8 Ecospace fishery
  9. 10 Using Ecospace. Part 1: Ecospace inputs
  10. 11 Using Ecospace. Part 2: Ecospace outputs
    1. 10.2 Ecospace parameters
    1. 11.2 Ecospace results
    1. 11.3 Ecospace tools
    1. 6.4 Edit fleets
    1. 6.2 Edit groups
    1. 10.9 Edit layers
    1. 6.3 Edit multi-stanza groups
    1. 3.9 Effect of P/B (Z) and vulnerability for time series fitting
    1. 8.12 Egg production
    1. 7.11 Electivity
    1. 7.16 EwE network analysis plugin
    1. 5.7 File menu
    1. 6.10 Fishery
    1. 7.13 Fishery (Ecopath parameterization)
    1. 9.8 Fishing policy search - background
    1. 9.11 Fit to time series
    1. 8.14 Fleet size dynamics
    1. 7.15 Flow diagram
    1. 7.23 Flow from detritus
    1. 7.19 Flows and biomasses
    1. 3.6 Foraging time and predation risk
    1. 8.9 Forcing function
  11. Ecopath with Ecosim version 6
    1. 5.6 General features of the Graphic User Interface
    1. 5.5 Getting help
    1. 8.1 Getting started in Ecosim: The Ecosim menu
    1. 10.1 Getting started in Ecospace: The Ecospace menu
    1. 8.3 Group info
    1. 3.22 Hatchery populations in Ecosim
    1. 5.11 Help menu
    1. 3.8 Hints for fitting models to time series reference data
    1. 5.1 How to obtain the Ecopath with Ecosim 6 software
  12. Image Attachments
    1. 9.9 Implementing policy optimization in Ecosim
    1. 8.6 Import time series
  13. 16. Index
    1. 5.3 Installing and running Ecopath with Ecosim
  14. 1 Introduction
  15. 2 Introductory material: Ecopath
  16. 3 Introductory material: Ecosim
  17. 4 Introductory material: Ecospace
    1. 7.4 Key indices
    1. 6.12 Landings
    1. 3.16 Linking mediation and time forcing functions to trophic interaction …
  18. 13 Major pitfalls in the application of EwE
    1. 9.10 Maximize portfolio utility
    1. 8.7 Mediation
    1. 7.21 Mixed trophic impact
    1. 6.5 Model description
    1. 3.20 Modelling effort dynamics
    1. 3.11 Modeling switching behavior in Ecosim
    1. 9.7 Monte Carlo runs
    1. 7.5 Mortalities
    1. 7.6 Mortality coefficients
    1. 2.1 Mortality for a prey is consumption for a predator
    1. 7.25 Ecosim network analysis indices (by Sheila Heymans)
    1. 7.10 Niche overlap
    1. 6.16 Non-market price
    1. 7.1 Notes on parameterizing an Ecopath model
    1. 4.6 Numerical solutions
    1. 3.18 Nutrient cycling and nutrient limitation in Ecosim
    1. 6.15 Off-vessel price
    1. 1.2 On modelling
    1. 2.3 On the need for input parameters
    1. 2.8 Other mortality
    1. 6.9 Other production
    1. 3.23 Parameter sensitivity
    1. 7.7 Predation mortality
    1. 3.10 Predator satiation and handling time effects
    1. 3.5 Predicting consumption
    1. 4.5 Predicting spatial fishing patterns
    1. 4.4 Prediction of mixing rates
    1. 5.4 Previous versions
    1. 3.17 Primary production
    1. 7.20 Primary production required
    1. 2.6 Production
  19. 15 References
    1. 2.9 Representation of multi-stanza life histories in Ecopath, Ecosim and …
    1. 4.7 Representing multi-stanza life histories in Ecospace
    1. 4.2 Representing seasonal migration in Ecospace
    1. 7.9 Respiration
    1. 9.2 Run Ecosim
    1. 11.1 Run Ecospace
    1. 7.12 Search rates
    1. 11.5 Setting importance layers
    1. 5.2 Software support, copyright and liability
    1. 4.8 Spatial optimization procedures
    1. 11.4 Spatial optimizations
    1. 9.5 Stock recruitment (S/R) plot (multi-stanza groups only)
    1. 7.18 Summary of flow data
    1. 2.2 The energy balance of a box
    1. 8.5 Time series
    1. 3.7 Time series fitting in Ecosim: evaluating fisheries and environmental …
    1. 5.9 Tools menu
    1. 7.17 Trophic level decomposition
    1. 3.21 Using Ecosim for Stock Reduction Analysis
    1. 3.13 Using Ecosim to study compensation in recruitment relationships
    1. 5.8 View menu
    1. 8.4 Vulnerabilities (flow control: foraging arena parameter)
    1. 3.3 Vulnerabilities in Ecosim
    2. Note about vulnerabilities and the EwE user interface
    1. 5.10 Windows menu
    1. 6.11 Definition of fleets

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